dereneaton / ipyradLinks
Interactive assembly and analysis of RAD-seq data sets
☆77Updated this week
Alternatives and similar repositories for ipyrad
Users that are interested in ipyrad are comparing it to the libraries listed below
Sorting:
- Recovering genes from targeted sequence capture data☆128Updated 3 months ago
- RADseq workflow using STACKS☆59Updated last week
- Workflow to detect and phase hybrids in target capture data☆20Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆81Updated 9 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Methods for examining PCA locally along the genome.☆83Updated last year
- A collection of usefull tools for RAD or GBS data analysis☆33Updated 6 months ago
- ☆42Updated 2 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆22Updated 2 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 6 years ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Repository for speciation genomics website☆26Updated last month
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆106Updated 2 weeks ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- ☆30Updated 3 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆57Updated 4 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆178Updated 9 months ago
- a bash pipeline for RAD sequencing☆55Updated 8 months ago
- Hybridization detection using phylogenetic invariants☆49Updated 11 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year