Alternatives and similar repositories for ipyrad:

Users that are interested in ipyrad are comparing it to the libraries listed below

• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last week
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆119Updated 2 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆74Updated 2 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 5 months ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆24Updated this week
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆168Updated 3 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆64Updated 11 months ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆88Updated 11 months ago
• CoBiG2 / RAD_Tools
  A collection of usefull tools for RAD or GBS data analysis
  ☆32Updated 2 weeks ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆149Updated 7 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 8 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 6 months ago
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆95Updated this week
• esayyari / DiscoVista
  ☆39Updated last year
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• pontussk / PMDtools
  Compute postmortem damage patterns and decontaminate ancient genomes
  ☆15Updated 3 years ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 7 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆64Updated last year
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆163Updated last year
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 2 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆112Updated 4 years ago