dereneaton / ipyrad
Interactive assembly and analysis of RAD-seq data sets
☆73Updated last week
Alternatives and similar repositories for ipyrad:
Users that are interested in ipyrad are comparing it to the libraries listed below
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- RADseq workflow using STACKS☆57Updated last month
- Recovering genes from targeted sequence capture data☆115Updated last week
- Topology weighting by iterative sampling of sub-trees☆73Updated 2 weeks ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆24Updated this week
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆166Updated last month
- Workflow to detect and phase hybrids in target capture data☆18Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆56Updated 2 months ago
- Scripts for analysis used during the course☆85Updated 8 months ago
- Repository for speciation genomics website☆24Updated 6 months ago
- A collection of usefull tools for RAD or GBS data analysis☆32Updated 10 months ago
- Estimating Effective Migration Surfaces☆102Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆141Updated 5 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆44Updated 2 months ago
- Tutorials on phylogenetic and phylogenomic inference☆41Updated this week
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆63Updated 8 months ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- a bash pipeline for RAD sequencing☆52Updated 8 months ago
- SMC++ infers population history from whole-genome sequence data.☆157Updated 11 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆124Updated 7 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated 8 months ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆15Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 2 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆92Updated this week
- ☆38Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆78Updated 11 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆44Updated 4 months ago