Alternatives and similar repositories for vcf2phylip:

Users that are interested in vcf2phylip are comparing it to the libraries listed below

• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆297Updated 3 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆314Updated 8 months ago
• BGI-shenzhen / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆188Updated 5 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆240Updated 2 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆182Updated 11 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆345Updated 2 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆247Updated last month
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated 3 weeks ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆206Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆294Updated 2 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆354Updated 6 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆215Updated 3 years ago
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆256Updated last week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆283Updated 3 months ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆248Updated 4 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆200Updated 3 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆330Updated last week
• ANGSD / angsd
  Program for analysing NGS data.
  ☆233Updated 2 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆232Updated last year
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆376Updated 8 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆273Updated 3 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆374Updated last week
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆310Updated last year
• nf-core / mag
  Assembly and binning of metagenomes
  ☆226Updated this week
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆369Updated last year
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆200Updated 3 weeks ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆357Updated last month
• jtlovell / GENESPACE
  ☆197Updated this week
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆133Updated 3 years ago