edgardomortiz / vcf2phylipLinks
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
☆326Updated 2 years ago
Alternatives and similar repositories for vcf2phylip
Users that are interested in vcf2phylip are comparing it to the libraries listed below
Sorting:
- General tools for genomic analyses.☆380Updated 9 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Tool to plot synteny and structural rearrangements between genomes☆333Updated 8 months ago
- TransDecoder source☆300Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆287Updated 2 weeks ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆272Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆371Updated 3 years ago
- Genome Assembly and Annotation Service code☆215Updated 2 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆358Updated 10 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆192Updated last year
- Extensive de-novo TE Annotator☆421Updated 2 months ago
- Finds SNP sites from a multi-FASTA alignment file☆269Updated 5 years ago
- Program for analysing NGS data.☆250Updated 9 months ago
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- An overview of all nanopack tools☆272Updated 2 years ago
- De-Novo Repeat Discovery Tool☆229Updated 5 months ago
- ☆270Updated 5 months ago
- Synteny and Rearrangement Identifier☆433Updated 7 months ago
- quality filtering tool for long reads☆380Updated 3 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆201Updated last year
- Any Way to Show Multi genomic Synteny☆214Updated 5 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆337Updated 3 months ago
- Tutorials on phylogenetic and phylogenomic inference☆394Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆289Updated last week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆398Updated 6 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Eukaryotic Genome Annotation Pipeline☆370Updated 5 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆545Updated last year