edgardomortiz / vcf2phylipLinks
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
☆312Updated last year
Alternatives and similar repositories for vcf2phylip
Users that are interested in vcf2phylip are comparing it to the libraries listed below
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆192Updated 10 months ago
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆257Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆188Updated last year
- Genome Assembly and Annotation Service code☆212Updated last year
- General tools for genomic analyses.☆364Updated 3 months ago
- ☆211Updated 5 months ago
- Synteny and Rearrangement Identifier☆387Updated last month
- Fast and accurate de novo assembler for long reads☆388Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- TransDecoder source☆291Updated 8 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆180Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆511Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Filtering and trimming of long read sequencing data☆206Updated 2 years ago
- Any Way to Show Multi genomic Synteny☆194Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- Assembly and binning of metagenomes☆239Updated this week
- Eukaryotic Genome Annotation Pipeline☆355Updated 3 weeks ago
- quality filtering tool for long reads☆343Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆271Updated last week
- An overview of all nanopack tools☆257Updated 2 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆169Updated 2 years ago
- Extensive de-novo TE Annotator☆390Updated 2 weeks ago
- Tutorials on phylogenetic and phylogenomic inference☆386Updated last year