Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
☆345Jul 7, 2023Updated 3 years ago
Alternatives and similar repositories for vcf2phylip
Users that are interested in vcf2phylip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General tools for genomic analyses.☆400Mar 25, 2026Updated 7 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆170Sep 19, 2026Updated last month
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆184Apr 17, 2026Updated 6 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated last month
- Haplotype based scans for selection☆151Jun 5, 2026Updated 5 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆212Jul 16, 2026Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆359Jul 27, 2026Updated 3 months ago
- Tutorials on phylogenetic and phylogenomic inference☆402Apr 12, 2026Updated 6 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆936Updated this week
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆498Jul 1, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 4 months ago
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆181Updated this week
- RAxML Next Generation: faster, easier-to-use and more flexible☆483Oct 30, 2026Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆112Jun 20, 2026Updated 4 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆61Jun 20, 2026Updated 4 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Dec 30, 2023Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆505Jul 7, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆261Jun 25, 2026Updated 4 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Aug 21, 2023Updated 3 years ago
- Program for analysing NGS data.☆269Oct 22, 2026Updated 2 weeks ago
- Accurate Species TRee ALgorithm☆282Apr 1, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆330Apr 8, 2024Updated 2 years ago
- High-precision TE Annotator☆168Dec 4, 2025Updated 11 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆403Feb 13, 2025Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆305Sep 23, 2026Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆231Jul 5, 2025Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆67Apr 5, 2018Updated 8 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 10 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆340Jul 22, 2026Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆470Jun 17, 2026Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆99Dec 3, 2025Updated 11 months ago