A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
☆25Mar 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for Structure_threader
Users that are interested in Structure_threader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- A collection of usefull tools for RAD or GBS data analysis☆33Mar 14, 2025Updated last year
- Streamlining phylogenomic data gathering, processing and visualization☆89Sep 26, 2018Updated 7 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆12Oct 5, 2020Updated 5 years ago
- ☆46Mar 18, 2025Updated last year
- Mutual nearest neighbor graphs and data visualization for genomic population networks☆17Feb 6, 2022Updated 4 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆20Dec 3, 2022Updated 3 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 2 years ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated 11 months ago
- Population genetics analyses from NGS data☆27Mar 8, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- An R package for the spatial analysis of population genetic data.☆20Mar 19, 2026Updated 3 weeks ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Interactive assembly and analysis of RAD-seq data sets☆80Mar 3, 2026Updated last month
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Mar 10, 2026Updated 3 weeks ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- ☆29Mar 5, 2024Updated 2 years ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆25Jan 16, 2026Updated 2 months ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 8 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Fast gradient-based optimization of resistance surfaces☆15Jul 9, 2020Updated 5 years ago