gymreklab / mutea-autosomalLinks
Mutation rate analysis of autosomal loci
☆15Updated 5 years ago
Alternatives and similar repositories for mutea-autosomal
Users that are interested in mutea-autosomal are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- ☆23Updated last month
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- Sample Contamination Estimate from VCF☆20Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆16Updated 11 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 6 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- Tools for merging Tandem Repeat VCF files☆37Updated 8 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago