R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
☆112Apr 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for SNPRelate
Users that are interested in SNPRelate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46May 2, 2026Updated last week
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Dec 30, 2023Updated 2 years ago
- ☆11Mar 14, 2026Updated last month
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆336Jul 7, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 8 years ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 4 months ago
- Eigen tools by Nick Patterson and Alkes Price lab☆201Nov 3, 2023Updated 2 years ago
- R front-end for TASSEL 5☆33Apr 1, 2026Updated last month
- A pipeline that accepts a VCF file to run through Admixture☆64Updated this week
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆212Jul 5, 2025Updated 10 months ago
- ☆18Oct 4, 2023Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Algorithm for rapid, phase-free detection of long identical by descent segments☆23Mar 13, 2026Updated last month
- Interactive assembly and analysis of RAD-seq data sets☆80Mar 3, 2026Updated 2 months ago
- R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)☆20May 3, 2026Updated last week
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 8 months ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆45Jul 25, 2025Updated 9 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Sep 10, 2025Updated 7 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 7 years ago
- Pinpoints the mutation favored by selection☆35Nov 2, 2021Updated 4 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆51Nov 13, 2023Updated 2 years ago
- Haplotype based scans for selection☆146Apr 30, 2026Updated last week
- ☆94Jan 11, 2022Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 6 months ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆206Aug 15, 2024Updated last year