Alternatives and similar repositories for SNPRelate

Users that are interested in SNPRelate are comparing it to the libraries listed below

• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆109Updated 7 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 4 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆66Updated 4 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆130Updated last month
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆50Updated 2 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆79Updated 9 months ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆28Updated 3 months ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆60Updated last month
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 4 months ago
• vsbuffalo / bioawk-tutorial
  ☆43Updated 12 years ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated 11 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆93Updated last year
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆81Updated last week
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆73Updated last year
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 3 months ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last year
• ramachandran-lab / pong
  Fast analysis and visualization of latent clusters in population genetic data
  ☆75Updated 3 years ago
• TickingClock1992 / RIdeogram
  ☆174Updated 4 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated 11 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆113Updated last year