Alternatives and similar repositories for phytest

Users that are interested in phytest are comparing it to the libraries listed below

• duchene / phylomad
  ☆19Updated last year
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 11 months ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 8 months ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• AliTVTeam / AliTV-perl-interface
  ☆10Updated 3 years ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆19Updated 10 months ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated 10 months ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated 3 weeks ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆22Updated last month
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last month
• 01life / ViromeFlowX
  ☆10Updated 3 months ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• jsevo / taxumap
  ☆16Updated 2 years ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆16Updated last year
• somme89 / rapidNJ
  Fast implementation of the Neighbour-Joining method for phylogenetic inference
  ☆17Updated 11 months ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 4 years ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆15Updated 2 months ago
• Taming-the-BEAST / Introduction-to-BEAST2
  This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
  ☆10Updated last month
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 11 months ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆29Updated last year
• UtaDaphniaLab / Gene_Annotation_Easy_Viewer
  Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.
  ☆11Updated 3 years ago
• jenniferlu717 / SkewIT
  GC Skew Test for Bacterial Genomes
  ☆30Updated 2 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated 2 months ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆21Updated last year