Quality control for phylogenetic analyses
☆13Mar 9, 2026Updated last week
Alternatives and similar repositories for phytest
Users that are interested in phytest are comparing it to the libraries listed below
Sorting:
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 3 months ago
- ☆18Jun 11, 2024Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 8 months ago
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Feb 27, 2026Updated 3 weeks ago
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- ☆15Jan 10, 2023Updated 3 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆42Mar 12, 2026Updated last week
- Simple-to-use interactive comparison of two bacterial genomes☆26Jan 30, 2026Updated last month
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 10, 2025Updated 10 months ago
- HTML ASCII symbol reference table to use in your projects.☆12Aug 25, 2013Updated 12 years ago
- Variant call verification☆16May 12, 2025Updated 10 months ago
- Phylogenetic tree library for JavaScript/Node.js☆38Nov 16, 2022Updated 3 years ago
- ☆12Mar 16, 2025Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- A new graphical interface for RAxML☆23Feb 28, 2026Updated 2 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- ☆16May 13, 2022Updated 3 years ago
- ☆20Jun 15, 2024Updated last year
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- ☆16Feb 20, 2024Updated 2 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- Biological file format specimens for testing packages, and functions to assist in testing.☆15Nov 18, 2025Updated 4 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆142Apr 6, 2025Updated 11 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Graph Clustering Merger☆36Mar 25, 2024Updated last year
- a tool for simulating nanopore raw signal data☆75Mar 4, 2026Updated 2 weeks ago
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆250Updated this week
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- Evaluating Nanopore-based bacterial variant calling☆22Jul 23, 2025Updated 7 months ago