Quality control for phylogenetic analyses
☆13Jan 19, 2026Updated last month
Alternatives and similar repositories for phytest
Users that are interested in phytest are comparing it to the libraries listed below
Sorting:
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 2 months ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆10Jul 8, 2025Updated 7 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Variant call verification☆16May 12, 2025Updated 9 months ago
- ☆18Jun 11, 2024Updated last year
- Main development repository for SpreadGL☆20Sep 30, 2024Updated last year
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- ☆15Jan 10, 2023Updated 3 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 10, 2025Updated 9 months ago
- A new graphical interface for RAxML☆23Feb 19, 2026Updated last week
- ☆20Jun 15, 2024Updated last year
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆25Jan 30, 2026Updated 3 weeks ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- Phylogenetic tree library for JavaScript/Node.js☆37Nov 16, 2022Updated 3 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 3 weeks ago
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Updated this week
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆42Feb 20, 2026Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- ☆16May 13, 2022Updated 3 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 3 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 3 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- ☆11Feb 9, 2025Updated last year
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated last year