rajanil / fastStructureLinks
A variational framework for inferring population structure from SNP genotype data.
☆142Updated 2 years ago
Alternatives and similar repositories for fastStructure
Users that are interested in fastStructure are comparing it to the libraries listed below
Sorting:
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆110Updated 5 months ago
- Programs to analyse NGS data for population genetics purposes☆178Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆92Updated last year
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- A library for running k-mers based GWAS☆122Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- a bash pipeline for RAD sequencing☆55Updated 10 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- ☆122Updated 4 months ago
- Trinotate source code☆84Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 months ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- Segmented HAPlotype Estimation and Imputation Tool☆97Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated last week
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆90Updated last year