rajanil / fastStructure
A variational framework for inferring population structure from SNP genotype data.
☆134Updated last year
Related projects ⓘ
Alternatives and complementary repositories for fastStructure
- Calculate summary statistics and manipulate multiple sequence alignments☆75Updated 9 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆93Updated last month
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆141Updated 8 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆192Updated 3 months ago
- A set of functions to visualise genotypes based on a VCF☆84Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆191Updated 10 months ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆47Updated 8 months ago
- Haplotype based scans for selection☆114Updated last month
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆109Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆137Updated 2 weeks ago
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- SMC++ infers population history from whole-genome sequence data.☆152Updated 10 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆92Updated 7 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆119Updated 5 months ago
- a bash pipeline for RAD sequencing☆52Updated 6 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 6 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆162Updated last week
- ☆191Updated 3 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆83Updated 10 months ago
- "Reads to report" for public health and clinical microbiology☆136Updated 8 months ago
- ☆111Updated 2 weeks ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆112Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- ☆163Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Python programs for processing GFF3 files☆95Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- Read trimming tool for Illumina NGS data.☆127Updated 9 years ago
- An imagemagick-like frontend to Biopython SeqIO☆113Updated 8 months ago
- MITObim - mitochondrial baiting and iterative mapping☆110Updated 3 years ago