hernanmd / STRUCTUREPipelinesLinks
Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)
☆10Updated 4 years ago
Alternatives and similar repositories for STRUCTUREPipelines
Users that are interested in STRUCTUREPipelines are comparing it to the libraries listed below
Sorting:
- ☆14Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- ☆12Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- ☆18Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆16Updated last week
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- A box of genomics tools☆21Updated 4 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ☆12Updated 5 years ago
- ☆27Updated 2 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- ☆12Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- ☆16Updated 3 years ago
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- DFOIL: Introgression Testing for Five Taxa☆32Updated 4 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated 3 months ago