Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
☆175Apr 17, 2026Updated 2 months ago
Alternatives and similar repositories for easySFS
Users that are interested in easySFS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- General tools for genomic analyses.☆391Mar 25, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆70Apr 9, 2026Updated 2 months ago
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆337Jul 7, 2023Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆163Updated this week
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Tutorials on evolutionary genomics☆47Mar 11, 2022Updated 4 years ago
- ☆70Dec 5, 2022Updated 3 years ago
- Program for analysing NGS data.☆261Mar 6, 2025Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 3 months ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts for analysis used during the course☆97Apr 30, 2024Updated 2 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆92Jun 4, 2026Updated 3 weeks ago
- Useful bioinformatic scripts☆60Feb 23, 2026Updated 4 months ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆48Mar 7, 2024Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆219Jul 5, 2025Updated 11 months ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 5 months ago
- ☆78Jun 2, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analysis of convergence between organismal traits and DNA/protein sequences☆68Apr 17, 2026Updated 2 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆112Nov 17, 2025Updated 7 months ago
- Haplotype based scans for selection☆149Jun 5, 2026Updated 3 weeks ago
- Genetic Algorithm for Demographic Model Analysis☆57Feb 3, 2026Updated 4 months ago
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year