Alternatives and similar repositories for easySFS

Users that are interested in easySFS are comparing it to the libraries listed below

• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆178Updated 9 months ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆167Updated last year
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆92Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆188Updated 4 months ago
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆143Updated last month
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆176Updated 5 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆116Updated 11 months ago
• nt246 / lcwgs-guide-tutorial
  ☆90Updated 3 years ago
• HuffordLab / NAM-genomes
  Detailed bioinformatics scripts and methods used in the NAM genome paper.
  ☆84Updated 8 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆126Updated last week
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆128Updated 3 months ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆98Updated 3 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆66Updated last year
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated 8 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆209Updated last year
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆149Updated 7 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆222Updated 3 weeks ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆118Updated 4 years ago
• lh3 / psmc
  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
  ☆172Updated this week
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆162Updated 11 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆151Updated 2 months ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆114Updated 4 years ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated 11 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated last month
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆130Updated 11 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆81Updated 9 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆108Updated 2 months ago
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆145Updated 3 months ago