isaacovercast / easySFSLinks
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
☆157Updated last year
Alternatives and similar repositories for easySFS
Users that are interested in easySFS are comparing it to the libraries listed below
Sorting:
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆179Updated 10 months ago
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆144Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 2 weeks ago
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- Scripts for analysis used during the course☆92Updated last year
- ☆91Updated 4 years ago
- A library for running k-mers based GWAS☆116Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- A genome completeness evaluation tool based on miniprot☆225Updated last month
- Recovering genes from targeted sequence capture data☆128Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated 11 months ago
- Yet another Hi-C scaffolding tool☆163Updated 11 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆174Updated 3 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆152Updated 3 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆100Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆146Updated 3 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆85Updated 9 months ago
- Haplotype based scans for selection☆134Updated last week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- ☆168Updated 2 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆108Updated 3 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago