CoBiG2 / RAD_ToolsLinks
A collection of usefull tools for RAD or GBS data analysis
☆33Updated 6 months ago
Alternatives and similar repositories for RAD_Tools
Users that are interested in RAD_Tools are comparing it to the libraries listed below
Sorting:
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated 3 weeks ago
- Topology weighting by iterative sampling of sub-trees☆81Updated 8 months ago
- Presentations from the course☆37Updated 2 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Hybridization detection using phylogenetic invariants☆48Updated 10 months ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- ☆41Updated 2 years ago
- Repository for speciation genomics website☆26Updated 2 weeks ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆23Updated 6 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆62Updated 10 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆35Updated 4 years ago
- RADseq workflow using STACKS☆58Updated last week
- MSMC2 Scripts☆26Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆24Updated 8 years ago
- GONE: Scripts, programs and an example data set☆46Updated last month
- Synteny Imager☆64Updated last month
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Scripts to calculate population genetics statistics☆55Updated 7 years ago