CoBiG2 / RAD_ToolsLinks
A collection of usefull tools for RAD or GBS data analysis
☆33Updated 4 months ago
Alternatives and similar repositories for RAD_Tools
Users that are interested in RAD_Tools are comparing it to the libraries listed below
Sorting:
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 10 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last week
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Hybridization detection using phylogenetic invariants☆47Updated 9 months ago
- ☆41Updated last year
- Infer demographic history with the Moran model☆47Updated last month
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆79Updated 7 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆53Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆60Updated 9 months ago
- Repository for speciation genomics website☆26Updated last year
- Methods for examining PCA locally along the genome.☆83Updated 11 months ago
- A package for population structure inference from RAD-seq data☆33Updated 4 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆23Updated 5 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Presentations from the course☆38Updated last year
- RADseq workflow using STACKS☆59Updated last month
- Graph-aware Retrieval of Selective Sweeps☆21Updated 10 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 7 months ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- ☆18Updated 4 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago