CoBiG2 / RAD_ToolsLinks
A collection of usefull tools for RAD or GBS data analysis
☆33Updated 10 months ago
Alternatives and similar repositories for RAD_Tools
Users that are interested in RAD_Tools are comparing it to the libraries listed below
Sorting:
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Repository for speciation genomics website☆27Updated 4 months ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 3 months ago
- Presentations from the course☆38Updated 2 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Methods for examining PCA locally along the genome.☆87Updated last year
- RADseq workflow using STACKS☆61Updated last week
- ☆43Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Topology weighting by iterative sampling of sub-trees☆82Updated last year
- Hybridization detection using phylogenetic invariants☆52Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 3 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- ☆32Updated 3 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆24Updated 10 months ago
- MSMC2 Scripts☆28Updated 4 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- GONE: Scripts, programs and an example data set☆50Updated 6 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago