CoBiG2 / RAD_Tools
A collection of usefull tools for RAD or GBS data analysis
☆33Updated last month
Alternatives and similar repositories for RAD_Tools:
Users that are interested in RAD_Tools are comparing it to the libraries listed below
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Infer demographic history with the Moran model☆47Updated last month
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated 2 weeks ago
- MSMC2 Scripts☆24Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated last month
- ☆39Updated last year
- Repository for speciation genomics website☆25Updated 9 months ago
- Hybridization detection using phylogenetic invariants☆46Updated 5 months ago
- ☆26Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- Topology weighting by iterative sampling of sub-trees☆76Updated 3 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆58Updated 6 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- DFOIL: Introgression Testing for Five Taxa☆31Updated 3 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- RADseq workflow using STACKS☆57Updated last week
- Quantifying Introgression via Branch Lengths☆50Updated 2 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆18Updated 4 years ago
- Tutorials on evolutionary genomics☆43Updated 3 years ago
- Tutorial for visualising admixture on a map☆23Updated 4 years ago
- feature-based deep learning for the identification of selective sweeps☆55Updated this week