Alternatives and similar repositories for RAD_Tools:

Users that are interested in RAD_Tools are comparing it to the libraries listed below

• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated 5 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆57Updated 4 months ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 11 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 4 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated this week
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated 11 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆74Updated last month
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆27Updated 2 weeks ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆16Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 7 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 2 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆45Updated 6 months ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 5 months ago
• YuboZhangPKU / ERICA
  ☆18Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated 3 weeks ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆64Updated 10 months ago
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 3 years ago