Detecting natural selection from population-based genetic data
☆28Mar 13, 2019Updated 6 years ago
Alternatives and similar repositories for BayeScan
Users that are interested in BayeScan are comparing it to the libraries listed below
Sorting:
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Aug 29, 2017Updated 8 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Jan 12, 2024Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆22Jan 21, 2026Updated last month
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- a python package for finding tandem repeats from genomic sequences☆29Mar 19, 2025Updated 11 months ago
- Telomere compliment tools☆22Nov 17, 2025Updated 3 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- ☆13Sep 11, 2025Updated 5 months ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Aug 26, 2019Updated 6 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 8 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Taxonomy-aware DNA sequence processing toolkit☆33Feb 23, 2026Updated last week
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- ☆12May 6, 2022Updated 3 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last week
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Feb 19, 2020Updated 6 years ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- ☆28Dec 1, 2022Updated 3 years ago
- Sorting Intolerant From Tolerant For Genomes☆31Nov 3, 2017Updated 8 years ago
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 7 years ago