Alternatives and similar repositories for BayeScan

Users that are interested in BayeScan are comparing it to the libraries listed below

• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆48Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated 3 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆48Updated this week
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆88Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆77Updated 4 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆69Updated 3 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆27Updated 5 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆56Updated 3 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆28Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆37Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆27Updated 11 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• esayyari / DiscoVista
  ☆43Updated 2 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Updated 6 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆47Updated 3 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆29Updated 2 weeks ago
• harvardinformatics / degenotate
  ☆54Updated 7 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆39Updated 2 years ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
  ☆65Updated 2 weeks ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆51Updated 6 months ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆28Updated 7 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago