Alternatives and similar repositories for BayeScan

Users that are interested in BayeScan are comparing it to the libraries listed below

• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆46Updated 10 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated 11 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated last week
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 weeks ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated this week
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆61Updated 7 months ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated 2 weeks ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 6 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆67Updated 5 years ago
• harvardinformatics / degenotate
  ☆50Updated last month
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 7 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆60Updated 9 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last year
• darwintreeoflife / darwintreeoflife.data
  Interim data for the Darwin Tree of Life Project
  ☆33Updated 5 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆53Updated 2 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 10 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated last year
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• kr-colab / ReLERNN
  Recombination Landscape Estimation using Recurrent Neural Networks
  ☆59Updated 4 months ago