Alternatives and similar repositories for HybPiper

Users that are interested in HybPiper are comparing it to the libraries listed below

• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆172Updated 5 months ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆26Updated this week
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆151Updated 9 months ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆168Updated last year
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆124Updated 7 months ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆92Updated last year
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆132Updated last month
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated 2 weeks ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆79Updated 5 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• BenoitMorel / GeneRax
  ☆71Updated last year
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆112Updated 4 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆104Updated last year
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆97Updated 2 weeks ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆66Updated last year
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆116Updated 4 years ago
• nt246 / lcwgs-guide-tutorial
  ☆86Updated 3 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆84Updated last year
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆79Updated 3 years ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 2 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated last year
• asrivathsan / ONTbarcoder
  ☆29Updated last year
• bdesanctis / bamdam
  A post-mapping authentication toolkit for ancient metagenomics
  ☆9Updated last month
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆84Updated 2 years ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆133Updated 3 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆68Updated 7 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 4 months ago
• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆81Updated 2 years ago