NGSEP / NGSEPcoreLinks
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities is available in sourceforge (https://sourceforge.net/p/ngsep/wiki/Home/).
☆56Updated last week
Alternatives and similar repositories for NGSEPcore
Users that are interested in NGSEPcore are comparing it to the libraries listed below
Sorting:
- ☆26Updated 9 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆41Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 2 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆59Updated 2 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 3 months ago
- Synteny Imager☆65Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆58Updated 2 weeks ago
- HyPhy standalone analyses☆48Updated 2 months ago
- python plotly Circos from VCF☆40Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- General purpose population genetics software☆15Updated 6 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- ☆29Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- ☆45Updated 8 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 3 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago