Alternatives and similar repositories for IMa3

Users that are interested in IMa3 are comparing it to the libraries listed below

• rbouckaert / starbeast3
  ☆21Updated last month
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆15Updated 5 months ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆20Updated 8 months ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆16Updated last year
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆17Updated 3 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated 9 months ago
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆23Updated last year
• lliu1871 / mp-est
  MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function
  ☆12Updated 3 months ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 8 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆28Updated 4 years ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆15Updated 7 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• CAFS-bioinformatics / P_RNA_scaffolder
  use paired-end transcriptome reads to scaffold genomes
  ☆11Updated 6 years ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆31Updated last month
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆17Updated 3 years ago
• GenisGE / evalAdmix
  ☆15Updated last year
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated 2 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated last year
• sjoleary / SNPFILT
  ☆19Updated 8 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆16Updated last year
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆13Updated 5 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆23Updated last week
• pomo-dev / PoMo
  Implementation of a polymorphism aware phylogenetic model using HYPHY
  ☆19Updated 4 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆88Updated last year
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 7 years ago
• mossmatters / MJPythonNotebooks
  Visualizing gene tree conflict using Phyparts, and ETE3
  ☆14Updated 2 years ago