dereneaton / pyradLinks
Assembly and analysis of RADseq data sets
☆27Updated 9 years ago
Alternatives and similar repositories for pyrad
Users that are interested in pyrad are comparing it to the libraries listed below
Sorting:
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆61Updated 7 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 4 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Synteny Imager☆64Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- A package for population structure inference from RAD-seq data☆33Updated 4 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 13 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Visualize whole genome alignments as linear maps☆73Updated last month
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆62Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 5 months ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago