dereneaton / pyradView external linksLinks
Assembly and analysis of RADseq data sets
☆27Aug 22, 2016Updated 9 years ago
Alternatives and similar repositories for pyrad
Users that are interested in pyrad are comparing it to the libraries listed below
Sorting:
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- Interactive assembly and analysis of RAD-seq data sets☆81Jan 7, 2026Updated last month
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆24Mar 5, 2025Updated 11 months ago
- ☆12Mar 11, 2025Updated 11 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated 2 weeks ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Oct 8, 2025Updated 4 months ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- ☆11Dec 24, 2024Updated last year
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Sep 27, 2019Updated 6 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated 9 months ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 2 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- ☆11Jul 16, 2018Updated 7 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year