dereneaton / pyradLinks
Assembly and analysis of RADseq data sets
☆27Updated 9 years ago
Alternatives and similar repositories for pyrad
Users that are interested in pyrad are comparing it to the libraries listed below
Sorting:
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 13 years ago
- ☆64Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Genome Annotation Without Nightmares☆46Updated 8 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- General purpose population genetics software☆15Updated 6 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 5 months ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆44Updated this week
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Automatically exported from code.google.com/p/densitree☆28Updated 2 months ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- ☆30Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago