btmartin721 / raxml_ascbias
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
☆14Updated 5 months ago
Alternatives and similar repositories for raxml_ascbias:
Users that are interested in raxml_ascbias are comparing it to the libraries listed below
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 9 months ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- Scripts for population genetics analysis☆20Updated 2 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- Code for computing various support scores for internodes☆19Updated 4 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- ☆39Updated last year
- Toolkit for evolutionary analyses of linkage groups☆27Updated 8 months ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 3 years ago
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆21Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- ☆32Updated 4 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- ☆19Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ☆18Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago