Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
☆16Oct 12, 2024Updated last year
Alternatives and similar repositories for raxml_ascbias
Users that are interested in raxml_ascbias are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64Apr 26, 2026Updated last week
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated 11 months ago
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- An R Package to build and simulate coalescent models☆20Apr 22, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- genotype dimensionality reduction with a VAE☆49Mar 11, 2025Updated last year
- ☆12Feb 4, 2026Updated 3 months ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Topology weighting from unphased genotypes of any ploidy☆25Apr 18, 2026Updated 2 weeks ago
- ☆13Aug 18, 2023Updated 2 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆21Dec 3, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated last month
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 5 months ago
- MkDocs Embed External Markdown plugin that allow to inject section or all full markdown content from a given url. The goal is to show dif…☆11Feb 24, 2025Updated last year
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Sex assignment through coverage☆20May 23, 2025Updated 11 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- ☆26Apr 14, 2021Updated 5 years ago
- code and files for SPARC curation workflows☆17Updated this week
- ☆33Feb 24, 2026Updated 2 months ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆50Apr 25, 2026Updated last week