joanam / scriptsLinks
Scripts to handle NGS data and other biological data
☆22Updated 2 years ago
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- Scripts and resources for the haploblocks manuscript☆18Updated 5 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- ☆18Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆42Updated last year
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- ☆24Updated 8 years ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- ☆18Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆53Updated 5 months ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Updated last week
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- ☆25Updated 3 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- ☆42Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Useful bioinformatic scripts☆59Updated last year
- Presentations from the course☆39Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 3 months ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago