Scripts to handle NGS data and other biological data
☆22Jan 24, 2024Updated 2 years ago
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Jul 5, 2026Updated 2 weeks ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 6 years ago
- An R interface for the ADMIXTOOLS software☆37Nov 24, 2025Updated 7 months ago
- Presentations from the course☆40Aug 28, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Topology weighting from unphased genotypes of any ploidy☆29Jun 17, 2026Updated last month
- ☆12Sep 28, 2021Updated 4 years ago
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Scripts for analysis used during the course☆98Apr 30, 2024Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Oct 21, 2025Updated 9 months ago
- Short scripts for converting genetic data between formats.☆31Nov 11, 2022Updated 3 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- ☆33Jun 28, 2026Updated 3 weeks ago
- Interactive assembly and analysis of RAD-seq data sets☆82Mar 3, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 6 months ago
- GONE: Scripts, programs and an example data set☆56May 12, 2026Updated 2 months ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆58Sep 30, 2022Updated 3 years ago
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆65May 3, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Tutorial for visualising admixture on a map☆25Jan 4, 2021Updated 5 years ago
- ☆48Oct 17, 2025Updated 9 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆75Updated this week
- Suit of R-scripts to perform landscape genomic analyses☆14May 25, 2020Updated 6 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year