joanam / scriptsLinks
Scripts to handle NGS data and other biological data
☆22Updated last year
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- ☆17Updated 3 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆38Updated last year
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- ☆24Updated 8 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆12Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Infer demographic history with the Moran model☆48Updated 4 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- ☆24Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 2 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- ☆18Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆19Updated 2 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago