Alternatives and similar repositories for emu:

Users that are interested in emu are comparing it to the libraries listed below

• regevs / gamma_smc
  ☆18Updated last year
• TBooker / PicMin
  ☆11Updated last year
• MaikeMorrison / FSTruct
  ☆13Updated last year
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• duchene / phylomad
  ☆19Updated 8 months ago
• novikovalab / piawka
  The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
  ☆24Updated last week
• bwringe / hybriddetective
  ☆13Updated last year
• DessimozLab / omamer
  OMAmer - tree-driven and alignment-free protein assignment to sub-families
  ☆17Updated 3 weeks ago
• tskit-dev / tsdate
  Infer the age of ancestral nodes in a tree sequence.
  ☆20Updated last month
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• GenisGE / evalAdmix
  ☆12Updated 9 months ago
• mongiardino / chronospace
  que paquete
  ☆9Updated 7 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 3 years ago
• orangeSi / bam2msa
  convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
  ☆11Updated 9 months ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆16Updated 4 years ago
• bergmanlab / ngs_te_mapper2
  Software for detecting transposable element insertions from next-generation sequencing data
  ☆9Updated last year
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• GonzalezLab / T-lex3
  ☆15Updated 4 years ago
• lntran26 / donni
  machine learning applications for dadi
  ☆14Updated 3 weeks ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated this week
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated 11 months ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 6 months ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆14Updated 2 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated 5 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆36Updated 4 months ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago