A tool set to assess the quality of the per read phasing and reduce the errors.
☆13Jun 25, 2020Updated 5 years ago
Alternatives and similar repositories for phaseme
Users that are interested in phaseme are comparing it to the libraries listed below
Sorting:
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆14Oct 3, 2017Updated 8 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Feb 21, 2026Updated last month
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Aug 6, 2022Updated 3 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- ☆20Apr 13, 2022Updated 3 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Structural Variant Index☆75Dec 13, 2024Updated last year
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Sep 5, 2025Updated 6 months ago
- extract MSAs from genome variation graphs☆34Mar 3, 2026Updated 2 weeks ago
- ☆10Mar 4, 2025Updated last year
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- ☆20Mar 31, 2021Updated 4 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- ☆62Sep 15, 2025Updated 6 months ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Nov 17, 2021Updated 4 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago