sinamajidian / phasemeLinks
A tool set to assess the quality of the per read phasing and reduce the errors.
☆12Updated 5 years ago
Alternatives and similar repositories for phaseme
Users that are interested in phaseme are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆12Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- This is the Haplotypo repository☆22Updated last year
- ☆10Updated 7 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆16Updated 8 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 10 months ago
- A python wrapper around SURVIVOR☆20Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Toolkit for calling and analyzing de novo STR mutations☆16Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 11 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago