A tool set to assess the quality of the per read phasing and reduce the errors.
☆13Jun 25, 2020Updated 6 years ago
Alternatives and similar repositories for phaseme
Users that are interested in phaseme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 5 months ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 7 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- ARBitR: Assembly Refinement with Barcode-identity-tagged Reads☆10Oct 22, 2020Updated 6 years ago
- ☆16Oct 3, 2017Updated 9 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Dec 7, 2024Updated last year
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jun 21, 2017Updated 9 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- ☆13Oct 13, 2021Updated 5 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Mar 4, 2025Updated last year
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- Structural Variant Index☆77Jul 1, 2026Updated 3 months ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- ☆20Apr 13, 2022Updated 4 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 7 months ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 5 years ago
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction☆11Sep 29, 2026Updated last month
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Oct 15, 2026Updated 2 weeks ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 7 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- ☆32Nov 25, 2019Updated 6 years ago