Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
☆16Oct 12, 2024Updated last year
Alternatives and similar repositories for ClineHelpR
Users that are interested in ClineHelpR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64May 3, 2026Updated 2 weeks ago
- ☆16Jan 6, 2022Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Dec 1, 2020Updated 5 years ago
- Sorting Intolerant From Tolerant For Genomes☆32Nov 3, 2017Updated 8 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 4 months ago
- A collection of usefull tools for RAD or GBS data analysis☆33Mar 14, 2025Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 6 months ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆31Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆45Jul 25, 2025Updated 9 months ago
- ☆23Apr 15, 2026Updated last month
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 6 months ago
- Topology weighting by iterative sampling of sub-trees☆87Jan 5, 2025Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- An R Package to build and simulate coalescent models☆20May 6, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- RADseq workflow using STACKS☆61May 11, 2026Updated last week
- Recombination Landscape Estimation using Recurrent Neural Networks☆67Mar 27, 2026Updated last month
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆187Dec 19, 2024Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated last year
- Scripts for analysis used during the course☆96Apr 30, 2024Updated 2 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Interactive assembly and analysis of RAD-seq data sets☆80Mar 3, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 7 months ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- ☆13Nov 16, 2020Updated 5 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago