Alternatives and similar repositories for ClineHelpR:

Users that are interested in ClineHelpR are comparing it to the libraries listed below

• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆15Updated 3 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆19Updated last year
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆30Updated 3 years ago
• hugang123 / Dxy
  Caculate the genetic distance of Dxy(like Fst) between the two populations form the vcf file .
  ☆8Updated 6 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated last year
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆16Updated last year
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated 3 months ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 5 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆16Updated 4 years ago
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆11Updated 5 years ago
• chaoszhang / A-pro
  ASTRAL for PaRalogs and Orthologs
  ☆21Updated 2 years ago
• YuboZhangPKU / ERICA
  ☆18Updated last year
• hsigeman / findZX
  ☆19Updated 2 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated last year
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆10Updated 3 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated last month
• clairemerot / angsd_pipeline
  ☆26Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 3 weeks ago
• popgenmethods / LDhelmet
  Software package for estimating fine-scale recombination rate.
  ☆13Updated 3 years ago
• esayyari / DiscoVista
  ☆39Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 3 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆27Updated 8 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year