Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
☆16Oct 12, 2024Updated last year
Alternatives and similar repositories for ClineHelpR
Users that are interested in ClineHelpR are comparing it to the libraries listed below
Sorting:
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆64Jan 2, 2025Updated last year
- ☆16Jan 6, 2022Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- Sorting Intolerant From Tolerant For Genomes☆31Nov 3, 2017Updated 8 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- A collection of usefull tools for RAD or GBS data analysis☆33Mar 14, 2025Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Feb 26, 2026Updated 3 weeks ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆44Jul 25, 2025Updated 7 months ago
- ☆23Feb 12, 2026Updated last month
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 4 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- An R Package to build and simulate coalescent models☆20Updated this week
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- RADseq workflow using STACKS☆61Mar 11, 2026Updated last week
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Scripts for analysis used during the course☆96Apr 30, 2024Updated last year
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Interactive assembly and analysis of RAD-seq data sets☆80Mar 3, 2026Updated 2 weeks ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Oct 12, 2025Updated 5 months ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- ☆13Nov 16, 2020Updated 5 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago