genomecuration / JAMgLinks
Just Annotate My Genome
☆19Updated last year
Alternatives and similar repositories for JAMg
Users that are interested in JAMg are comparing it to the libraries listed below
Sorting:
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- ☆29Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- ☆28Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 11 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Visualising discordant reads☆15Updated 10 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆31Updated 5 years ago