genomecuration / JAMgLinks
Just Annotate My Genome
☆19Updated 10 months ago
Alternatives and similar repositories for JAMg
Users that are interested in JAMg are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- ☆28Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Implementation of ToL genome assembly workflows☆20Updated 3 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Parallel implementation of OrthoMCL☆21Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- ☆26Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago