genomecuration / JAMgLinks
Just Annotate My Genome
☆19Updated last year
Alternatives and similar repositories for JAMg
Users that are interested in JAMg are comparing it to the libraries listed below
Sorting:
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- ☆29Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Reference genome quality scores☆21Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Implementation of ToL genome assembly workflows☆24Updated 3 weeks ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Consensus genome annotation using OMA☆31Updated 6 months ago
- convert a blast output to a bed file☆12Updated 10 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Visualising discordant reads☆15Updated 10 years ago
- ☆26Updated 4 years ago