davismcc / archive-scater
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
☆64Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for archive-scater
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆104Updated last year
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆104Updated last year
- ☆53Updated last month
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- Batch effects and the effective design of single-cell gene expression studies☆98Updated 5 years ago
- R package for analyzing single-cell RNA-seq data☆173Updated 8 months ago
- Transcript quantification import for modular pipelines☆136Updated 7 months ago
- Normalization for single cell RNA-seq data☆47Updated last year
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- Clone of the Bioconductor repository for the scater package.☆95Updated 4 months ago
- consistent quantification of external RNA-seq data sets☆58Updated 11 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 3 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆72Updated 3 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆77Updated 8 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 8 years ago
- Pipeline for processing inDrops sequencing data☆73Updated 6 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆60Updated 4 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆101Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- An R-based interface for loom files☆63Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆57Updated 3 years ago
- ☆67Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated 4 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- An R interface to enrichR☆77Updated 7 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago