davismcc / archive-scaterLinks
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
☆64Updated 7 years ago
Alternatives and similar repositories for archive-scater
Users that are interested in archive-scater are comparing it to the libraries listed below
Sorting:
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆106Updated 2 years ago
- Batch effects and the effective design of single-cell gene expression studies☆102Updated 5 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- Normalization for single cell RNA-seq data☆48Updated last month
- consistent quantification of external RNA-seq data sets☆58Updated last year
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated 2 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- R package for analyzing single-cell RNA-seq data☆175Updated last year
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆55Updated 4 months ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 4 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆79Updated 8 years ago
- Transcript quantification import for modular pipelines☆139Updated 2 weeks ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- An R interface to enrichR☆92Updated 5 months ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆169Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- ☆33Updated 7 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆73Updated 2 weeks ago