Alternatives and similar repositories for single_cell_analysis

Users that are interested in single_cell_analysis are comparing it to the libraries listed below

• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• lmweber / cytometry-clustering-comparison
  R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
  ☆45Updated 8 years ago
• immcore / iS-CellR
  iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data
  ☆24Updated 6 years ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆23Updated 6 years ago
• dzhang32 / dasper
  Detecting Aberrant Splicing Events from RNA-sequencing data
  ☆16Updated 10 months ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 5 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆27Updated 2 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 6 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• MarioniLab / BarcodeSwapping2017
  Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".
  ☆11Updated 7 years ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆48Updated 5 years ago
• boutroslab / caRpools
  Exploratory data analysis for pooled CRISPR/Cas9 screens
  ☆21Updated 8 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆66Updated 7 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated last week
• ELELAB / MoonlightR
  ☆17Updated last year
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆55Updated last year
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆13Updated 2 weeks ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆11Updated 6 years ago
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆46Updated 7 years ago
• wwylab / DeMixT
  ☆37Updated 3 weeks ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• arnavm / multimodal-scRNA-seq
  Figure depicting the breadth of multimodal scRNA-seq technologies
  ☆16Updated 6 years ago
• cancerdatasci / ceres
  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
  ☆30Updated 6 years ago