TimothyTickle / single_cell_analysis

Related projects ⓘ

Alternatives and complementary repositories for single_cell_analysis

• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆43Updated 8 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 2 months ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆22Updated 5 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last week
• gofflab / developing_mouse_retina_scRNASeq
  10x single cell RNA-seq data from the developing mouse retina
  ☆16Updated 3 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• kdkorthauer / scDD
  R package to identify genes with differential distributions in single-cell RNA-seq
  ☆32Updated 2 years ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 5 years ago
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆9Updated last year
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 3 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆15Updated 5 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• HCBravoLab / scTreeViz
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
  ☆10Updated 2 years ago
• forrest-lab / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆21Updated 4 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆15Updated 3 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆40Updated 6 months ago
• isb-cgc / examples-R
  Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
  ☆31Updated 6 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆23Updated 3 weeks ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆26Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆28Updated last year
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆46Updated last year
• leekgroup / phenopredict
  Use gene expression to predict phenotype sample information
  ☆19Updated 6 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆60Updated 5 years ago
• hms-dbmi / scw
  HSCI/Catalyst Single-cell RNA-Seq Workshop
  ☆19Updated 5 years ago