TimothyTickle / single_cell_analysisLinks
Introduction to single-cell RNA-Seq analysis workshop
☆15Updated 8 years ago
Alternatives and similar repositories for single_cell_analysis
Users that are interested in single_cell_analysis are comparing it to the libraries listed below
Sorting:
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆22Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- ☆36Updated last month
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 8 months ago
- XEnograft Visualization & Analysis☆11Updated last month
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Updated 7 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆60Updated 4 years ago
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Updated 8 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆55Updated last year