Alternatives and similar repositories for single_cell_analysis:

Users that are interested in single_cell_analysis are comparing it to the libraries listed below

• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated this week
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• cancerdatasci / demeter
  Deconvolution of seed effects from gene effects in large scale RNAi screens
  ☆10Updated 6 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 4 months ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆22Updated 5 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 7 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 7 months ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆30Updated last year
• cBioPortal / cgdsr
  R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
  ☆24Updated 4 years ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• wwylab / DeMixT
  ☆35Updated 6 months ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆23Updated 6 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆23Updated last year
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• kdkorthauer / scDD
  R package to identify genes with differential distributions in single-cell RNA-seq
  ☆32Updated 2 years ago
• icbi-lab / Immunophenogram
  ☆40Updated 6 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆27Updated last month
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆19Updated 6 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆31Updated 4 years ago
• jtleek / svaseq
  Analysis for svaseq paper
  ☆19Updated 10 years ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆22Updated 2 years ago