linnarsson-lab / loom-viewer
Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
☆35Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for loom-viewer
- R API and htmlwidget for Vitessce☆38Updated last month
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆62Updated last month
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- ☆29Updated 5 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated last year
- ☆23Updated 5 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆72Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- scNMT-seq gastrulation☆42Updated last year
- ☆37Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated 11 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆26Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 2 years ago
- Single-cell Case Control Analysis☆46Updated last week
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- Biology-centered data-driven quality control for scRNA-seq☆15Updated last year
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 9 months ago
- ☆35Updated 8 years ago