linnarsson-lab / loom-viewerLinks
Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
☆36Updated 7 months ago
Alternatives and similar repositories for loom-viewer
Users that are interested in loom-viewer are comparing it to the libraries listed below
Sorting:
- kallisto index tag extractor☆20Updated 6 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated 2 weeks ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 4 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- R API and htmlwidget for Vitessce☆42Updated this week
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- ☆28Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆26Updated 3 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- ☆20Updated 8 years ago
- ☆43Updated last year
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Normalization for single cell RNA-seq data☆48Updated last month
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- cyclone☆18Updated 10 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago