linnarsson-lab / loom-viewerLinks
Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format
☆37Updated 10 months ago
Alternatives and similar repositories for loom-viewer
Users that are interested in loom-viewer are comparing it to the libraries listed below
Sorting:
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated 2 months ago
- kallisto index tag extractor☆20Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- R API and htmlwidget for Vitessce☆44Updated 3 months ago
- easy access to benchmark datasets☆50Updated 7 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- ☆28Updated 6 years ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 8 months ago
- ☆21Updated 8 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆21Updated 9 months ago
- ☆20Updated 8 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆55Updated 9 months ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago