A tool for Read Multi-Mapper Resolution
☆24Feb 15, 2017Updated 9 years ago
Alternatives and similar repositories for mmr
Users that are interested in mmr are comparing it to the libraries listed below
Sorting:
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 9 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 10 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 4 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- High throughput, pain-free big data pipelines.☆30Mar 11, 2017Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 6 months ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 5 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Feb 20, 2015Updated 11 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- ☆15Mar 7, 2016Updated 9 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Nov 26, 2019Updated 6 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 3 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago