mikelove / alpine
Modeling and correcting fragment sequence bias for RNA-seq
☆24Updated 10 months ago
Alternatives and similar repositories for alpine:
Users that are interested in alpine are comparing it to the libraries listed below
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- ☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 weeks ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago