☆55Feb 19, 2025Updated last year
Alternatives and similar repositories for scone
Users that are interested in scone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆65Sep 4, 2017Updated 8 years ago
- Clone of the Bioconductor repository for the scater package.☆95Apr 29, 2026Updated last month
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Nov 7, 2016Updated 9 years ago
- ☆22Jul 4, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 13, 2026Updated last month
- ☆47Jun 21, 2019Updated 6 years ago
- Exploring dimension-reduced embeddings☆111Jul 6, 2022Updated 3 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 11 months ago
- Explore and share your scRNAseq clustering results☆52Sep 6, 2023Updated 2 years ago
- ☆119Aug 17, 2018Updated 7 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- ☆11Sep 5, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Clone of the Bioconductor repository for the scran package.☆48May 20, 2026Updated 2 weeks ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆72May 27, 2026Updated last week
- ☆29Feb 1, 2023Updated 3 years ago
- Implementation of the matrixStats API for sparse matrices☆55Apr 2, 2025Updated last year
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Analysis of single cell RNA-seq data course☆681Apr 11, 2022Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- ☆59Mar 18, 2026Updated 2 months ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- ☆14Mar 11, 2022Updated 4 years ago