hemberg-lab / SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
☆125Updated 3 years ago
Alternatives and similar repositories for SC3:
Users that are interested in SC3 are comparing it to the libraries listed below
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- chromatin Variability Across Regions (of the genome!)☆172Updated 9 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆139Updated last year
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- R package for analyzing single-cell RNA-seq data☆175Updated last year
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- R package to access DoRothEA's regulons☆144Updated last year
- Scanpy use cases.☆85Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ☆118Updated 6 years ago
- A tool for detecting somatic variants in single cell data☆198Updated 7 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆191Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆271Updated 2 years ago
- my notes for scATACseq analysis☆124Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆200Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆86Updated 5 years ago
- Clustering scRNAseq by genotypes☆178Updated 5 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated last year
- Tools for single-cell data processing☆123Updated 10 months ago
- Cell types enrichment analysis☆194Updated 10 months ago
- RNA velocity estimation in Python☆167Updated last year
- URD - Reconstruction of Branching Developmental Trajectories☆124Updated 3 years ago
- ☆85Updated 4 years ago