hemberg-lab / SC3Links
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
☆128Updated 4 years ago
Alternatives and similar repositories for SC3
Users that are interested in SC3 are comparing it to the libraries listed below
Sorting:
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆142Updated last year
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- Automated cell type classification☆114Updated 10 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆209Updated 2 years ago
- R package for analyzing single-cell RNA-seq data☆177Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆125Updated 4 years ago
- Scanpy use cases.☆87Updated 5 years ago
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- Interactively analyze single cell genomic data☆184Updated last month
- Simple simulation of single-cell RNA sequencing data☆232Updated last week
- ☆118Updated 7 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆239Updated 3 months ago
- Java tools for analyzing Drop-seq data☆130Updated last week
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Clustering scRNAseq by genotypes☆190Updated last week
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆215Updated last year
- ☆85Updated 5 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆177Updated 3 years ago
- R package to access DoRothEA's regulons☆153Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆138Updated last year
- Visualization of scRNA-seq data.☆99Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago