hemberg-lab / SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
☆121Updated 3 years ago
Alternatives and similar repositories for SC3:
Users that are interested in SC3 are comparing it to the libraries listed below
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆157Updated last year
- chromatin Variability Across Regions (of the genome!)☆162Updated 6 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆189Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- R package to access DoRothEA's regulons☆142Updated 11 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- Benchmarking computational single cell ATAC-seq methods☆180Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆135Updated 9 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- SingleCellNet: classify single cells across species and platforms☆134Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆263Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆229Updated last year
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆101Updated last year
- R package for analyzing single-cell RNA-seq data☆173Updated 11 months ago
- Course material in notebook format for learning about single cell bioinformatics methods☆101Updated 8 years ago
- ☆118Updated 6 years ago
- A tool for detecting somatic variants in single cell data☆183Updated 4 months ago
- Simple simulation of single-cell RNA sequencing data☆222Updated last month
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆220Updated 11 months ago
- Bench-marking classification tools for scRNA-seq data☆184Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆105Updated 3 months ago
- Scanpy use cases.☆80Updated 4 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆203Updated 11 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆153Updated 7 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆90Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago