Alternatives and similar repositories for gcapc

Users that are interested in gcapc are comparing it to the libraries listed below

• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• Teichlab / GPfates
  ☆20Updated 8 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• favorov / stereogene
  ☆12Updated 2 months ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• COMBINE-lab / EDS
  A simple, intuitive and Efficient single cell binary Data Storage format
  ☆15Updated 5 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 6 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• flo-compbio / xlmhg
  XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
  ☆14Updated 2 years ago
• jernst98 / ChromImpute
  ☆16Updated last year
• rthurman / hotspot
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
  ☆16Updated 11 years ago
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 8 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆28Updated 3 weeks ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆43Updated 3 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 5 years ago
• Cibiv / trumicount
  Correctly counting molecules using unique molecular identifiers (UMIs)
  ☆9Updated 3 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 5 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago