ChIP-seq peak calling with GC effects adjustment
☆10Jul 5, 2018Updated 8 years ago
Alternatives and similar repositories for gcapc
Users that are interested in gcapc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment leng…☆10Nov 20, 2025Updated 11 months ago
- ☆14Jul 20, 2026Updated 3 months ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated 11 months ago
- ☆13Aug 30, 2025Updated last year
- Inference of differential exon usage in RNA-Seq☆10Updated this week
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated 3 weeks ago
- This repository provides a set of Python functions to simplify working with gnomAD Hail Tables. It includes tools for data access, filter…☆14Updated this week
- Run Nx2 Cross Validation for multiple binary classifiers in parallel with optional downsampling☆13Aug 7, 2026Updated 2 months ago
- Benchmarking study of recent covariate-adjusted FDR methods☆16Apr 16, 2019Updated 7 years ago
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- JAMM Peak Finder for Sequencing Datasets☆29Mar 12, 2020Updated 6 years ago
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 2 weeks ago
- AC-PCA: simultaneously performs dimension reduction and adjustment for confounding variation☆14Sep 26, 2020Updated 6 years ago
- TFFM framework☆13Sep 22, 2025Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 10 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆49Jun 21, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Oct 27, 2021Updated 5 years ago
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 11 years ago
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Jan 24, 2020Updated 6 years ago
- Estimate genetic correlation using predicted expression☆28Mar 8, 2018Updated 8 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆32Jul 27, 2023Updated 3 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 9 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Multi-view Factorization AutoEncoder with Network Constraints for Multi-omic Integrative Analysis☆12Sep 27, 2018Updated 8 years ago
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- HTSlib high-throughput sequencing library as an R package☆11Apr 28, 2026Updated 6 months ago
- ☆28Jul 18, 2024Updated 2 years ago
- Alignment, quantification and fusion prediction from long RNA reads☆10Apr 11, 2022Updated 4 years ago
- fRagmentomics is a standardized and user-friendly R package that integrates fragmentomic feature extraction with fragment-level mutation …☆13Oct 20, 2026Updated last week