Teichlab / GPfatesLinks
☆21Updated 8 years ago
Alternatives and similar repositories for GPfates
Users that are interested in GPfates are comparing it to the libraries listed below
Sorting:
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- post-clustering differential expression test☆36Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- ☆28Updated 6 years ago
- ☆10Updated 7 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 weeks ago
- kallisto index tag extractor☆20Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago