Teichlab / GPfates
☆19Updated 7 years ago
Alternatives and similar repositories for GPfates:
Users that are interested in GPfates are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Normalization for single cell RNA-seq data☆9Updated 2 years ago
- ☆28Updated 6 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- scover☆23Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago