epurdom / clusterExperimentLinks
R package of techniques for comparing clusterings of single-cell sequencing data
☆40Updated last year
Alternatives and similar repositories for clusterExperiment
Users that are interested in clusterExperiment are comparing it to the libraries listed below
Sorting:
- ☆62Updated 6 months ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 weeks ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 8 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Gene-level general linear mixed model☆23Updated this week
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 2 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Clone of the Bioconductor repository for the basilisk package.☆28Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- ☆16Updated 6 years ago