epurdom / clusterExperimentLinks
R package of techniques for comparing clusterings of single-cell sequencing data
☆40Updated last year
Alternatives and similar repositories for clusterExperiment
Users that are interested in clusterExperiment are comparing it to the libraries listed below
Sorting:
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- ☆63Updated 7 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 2 weeks ago
- Gene-level general linear mixed model☆23Updated 3 weeks ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Clone of the Bioconductor repository for the basilisk package.☆29Updated last month
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 3 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 9 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago