epurdom / clusterExperiment
R package of techniques for comparing clusterings of single-cell sequencing data
☆37Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for clusterExperiment
- R package for benchmarking single cell analysis methods☆29Updated last year
- ☆62Updated last month
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 4 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆14Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last week
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated 7 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- See: https://www.iscb.org/ismb2018/3511#am1☆17Updated 6 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated last week
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆43Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆15Updated 4 years ago
- Reproducible workflows for the data analysis of "Baseline" project☆10Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 2 years ago
- R package for Flexible dot plots☆26Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Single-cell analysis with non-negative matrix factorization☆42Updated 2 weeks ago
- Workshop for CNV analysis with Bioconductor☆17Updated 3 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 5 months ago
- An analytics package for single cell data☆21Updated 2 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated last year
- ☆16Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago