catavallejos / BASiCSLinks
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
☆84Updated 3 weeks ago
Alternatives and similar repositories for BASiCS
Users that are interested in BASiCS are comparing it to the libraries listed below
Sorting:
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- ☆55Updated 7 months ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 7 months ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- easy access to benchmark datasets☆50Updated 7 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Normalization for single cell RNA-seq data☆48Updated 4 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 3 months ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 weeks ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆105Updated 2 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆129Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Transcript quantification import for modular pipelines☆141Updated last week
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆98Updated 4 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 2 weeks ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago