Glimma R package
☆50Sep 2, 2024Updated last year
Alternatives and similar repositories for Glimma
Users that are interested in Glimma are comparing it to the libraries listed below
Sorting:
- ☆11Sep 5, 2018Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last month
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 5 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 10 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Aug 25, 2023Updated 2 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 3 years ago
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Aug 1, 2023Updated 2 years ago
- Transcript quantification import for modular pipelines☆142Sep 30, 2025Updated 5 months ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Dec 11, 2025Updated 2 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 9 months ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Jun 19, 2025Updated 8 months ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆229Jan 14, 2026Updated last month
- NGS Language Bindings☆120Dec 6, 2023Updated 2 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago