kdkorthauer / scDDLinks
R package to identify genes with differential distributions in single-cell RNA-seq
☆33Updated 3 years ago
Alternatives and similar repositories for scDD
Users that are interested in scDD are comparing it to the libraries listed below
Sorting:
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- ☆41Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- ☆55Updated 4 months ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- ☆28Updated 6 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- An R-based interface for loom files☆66Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Normalization for single cell RNA-seq data☆48Updated last month
- An analytics package for single cell data☆22Updated 3 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 2 months ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago