Alternatives and similar repositories for scLVM:

Users that are interested in scLVM are comparing it to the libraries listed below

• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆174Updated last year
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆102Updated 8 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆66Updated 7 years ago
• AllonKleinLab / SPRING
  ☆68Updated 6 years ago
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆106Updated 4 years ago
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated 2 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• raphael-group / hotnet2
  HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
  ☆101Updated 6 years ago
• indrops / indrops
  Pipeline for processing inDrops sequencing data
  ☆76Updated 6 years ago
• vals / umis
  Tools for processing UMI RNA-tag data
  ☆129Updated 2 years ago
• jdblischak / singleCellSeq
  Batch effects and the effective design of single-cell gene expression studies
  ☆101Updated 5 years ago
• drisso / bioc2016singlecell
  Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
  ☆78Updated 8 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆142Updated 4 months ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆91Updated 2 years ago
• tallulandrews / scRNASeqPipeline
  ☆118Updated 6 years ago
• YosefLab / scone
  ☆53Updated 2 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 4 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 4 years ago
• statgen / demuxlet
  Genetic multiplexing of barcoded single cell RNA-seq
  ☆125Updated 9 months ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆147Updated 4 years ago
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆47Updated last year
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆117Updated last year
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆167Updated last year
• jernst98 / ChromHMM
  ☆84Updated 3 months ago
• TrinityCTAT / Trinity_CTAT
  ☆116Updated last year
• hemberg-lab / SC3
  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
  ☆125Updated 3 years ago