kieranrcampbell / phenopathView external linksLinks
Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
☆12Mar 21, 2019Updated 6 years ago
Alternatives and similar repositories for phenopath
Users that are interested in phenopath are comparing it to the libraries listed below
Sorting:
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆10Oct 6, 2017Updated 8 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- SV☆14May 3, 2018Updated 7 years ago
- ☆15Jun 3, 2019Updated 6 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- Deep neural network for predicting methylation states of single cells☆13Jan 19, 2017Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Materials for the Wednesday Afternoon Machine Learning workshop☆19Jun 5, 2015Updated 10 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 10 months ago
- Single-cell Case Control Analysis☆52Jan 29, 2026Updated 2 weeks ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 weeks ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆20Jul 19, 2022Updated 3 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆23Jan 23, 2026Updated 3 weeks ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆26Oct 29, 2019Updated 6 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 3 weeks ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- Clone identification from single-cell data☆61Nov 10, 2022Updated 3 years ago
- This is a repo for the Machine Learning Immunogenicity Team in the August 2016 NCBI Hackathon☆24Oct 28, 2016Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆30Updated this week
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- A better, faster way to count guides in CRISPR screens.☆34Apr 11, 2025Updated 10 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago