Alternatives and similar repositories for phenopath

Users that are interested in phenopath are comparing it to the libraries listed below

• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 4 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 8 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆19Updated 3 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 6 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• Teichlab / GPfates
  ☆21Updated 8 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• kharchenkolab / hahmmr
  Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq
  ☆13Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 6 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• hms-dbmi / scw
  HSCI/Catalyst Single-cell RNA-Seq Workshop
  ☆19Updated 6 years ago
• fmicompbio / eisaR
  Exon-Intron Split Analysis (EISA) in R
  ☆16Updated 3 months ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• kieranrcampbell / switchde
  Inference of switch-like differential expression along single-cell trajectories
  ☆21Updated 7 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated last year
• kdkorthauer / scDD
  R package to identify genes with differential distributions in single-cell RNA-seq
  ☆33Updated 3 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 5 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago