govinda-kamath / clustering_on_transcript_compatibility_countsLinks
Clustering cells from single cell RNA seq assays
☆46Updated 6 years ago
Alternatives and similar repositories for clustering_on_transcript_compatibility_counts
Users that are interested in clustering_on_transcript_compatibility_counts are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated 2 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- ☆34Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- ☆28Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 5 months ago
- easy access to benchmark datasets☆50Updated 7 years ago
- ☆23Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- ☆22Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆35Updated 7 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- ☆55Updated 6 months ago
- Preprocessing pipeline for (sc)ATAC data☆10Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago