vals / umis
Tools for processing UMI RNA-tag data
☆129Updated 2 years ago
Alternatives and similar repositories for umis:
Users that are interested in umis are comparing it to the libraries listed below
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- ☆116Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 3 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 2 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 2 weeks ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆146Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- Java tools for analyzing Drop-seq data☆125Updated last month
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Transcript quantification import for modular pipelines☆137Updated last year
- R package for bcbio RNA-seq analysis.☆62Updated 6 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- A tool for bigWig files.☆119Updated 6 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆172Updated 3 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- RNA-seq data analysis practical☆60Updated 10 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Detecting sites of genomic enrichment☆189Updated last year