vals / umis
Tools for processing UMI RNA-tag data
☆129Updated last year
Related projects ⓘ
Alternatives and complementary repositories for umis
- ☆115Updated last year
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆88Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated 3 weeks ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆142Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆92Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- ATAC-seq snakemake pipeline☆83Updated 4 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆97Updated last year
- Pipeline for processing inDrops sequencing data☆73Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago
- An R package for inferring the subclonal architecture of tumors☆115Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆67Updated 6 years ago
- Transcript quantification import for modular pipelines☆136Updated 7 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆104Updated last year
- A tool for bigWig files.☆118Updated 6 years ago
- mgatk: mitochondrial genome analysis toolkit☆102Updated 8 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆54Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆89Updated 7 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆121Updated 2 months ago
- ☆53Updated 3 weeks ago
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- Battenberg algorithm and associated implementation script☆51Updated 4 years ago