vals / umis
Tools for processing UMI RNA-tag data
☆129Updated last year
Related projects ⓘ
Alternatives and complementary repositories for umis
- ☆115Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆104Updated last year
- Transcript quantification import for modular pipelines☆136Updated 7 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆88Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆161Updated last month
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆89Updated 7 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated last year
- A tool for bigWig files.☆118Updated 6 years ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated last year
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- AQUAS TF and histone ChIP-seq pipeline☆105Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- RNA-seq data analysis practical☆60Updated 10 years ago
- Clone of the Bioconductor repository for the scater package.☆95Updated 4 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆142Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆115Updated last year
- Detecting sites of genomic enrichment☆187Updated last year
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆52Updated 4 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆103Updated 4 years ago