vals / umis
Tools for processing UMI RNA-tag data
☆129Updated last year
Alternatives and similar repositories for umis:
Users that are interested in umis are comparing it to the libraries listed below
- ☆116Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- Transcript quantification import for modular pipelines☆137Updated 10 months ago
- A SingleCell RNASeq pre-processing snakemake workflow☆146Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- A tool for bigWig files.☆119Updated 6 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆59Updated 5 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆107Updated 2 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆104Updated 2 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 2 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆56Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- Battenberg algorithm and associated implementation script