Alternatives and similar repositories for calculendar

Users that are interested in calculendar are comparing it to the libraries listed below

• wormtable / wormtable
  Write-once-read-many table for large datasets.
  ☆27Updated last year
• IQTLabs / freqgen
  🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
  ☆16Updated 2 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 7 months ago
• StanfordBioinformatics / loom
  A tool for running bioinformatics workflows locally or in the cloud.
  ☆30Updated 5 years ago
• dnanexus / dxfuse
  FUSE filesystem for the DNAnexus storage system
  ☆14Updated last month
• sjackman / uniqtag
  Abbreviate strings to short, unique identifiers
  ☆24Updated 3 years ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• brentp / toolshed
  python stuff I use
  ☆19Updated 5 years ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 8 years ago
• kdm9 / hail
  Hail: extract lines from a file, a la `head -n x | tail -n y`
  ☆9Updated 4 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• ENCODE-DCC / snovault
  The SnoVault general purpose hybrid object-relational database
  ☆16Updated last year
• kalekundert / exmemo
  Lab notebook for people who like the command line.
  ☆11Updated last year
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• jdrudolph / uniprot
  command-line and python interface to the uniprot database
  ☆10Updated 10 years ago
• arq5x / piledriver
  Basic, no assumptions, multi-pileup
  ☆24Updated 11 years ago
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 4 years ago
• tfenne / pipebuffer
  A command line program for large scale buffering between piped programs
  ☆15Updated 3 years ago
• JohnLonginotto / log.bio
  Log command line events to a graph database :)
  ☆13Updated 9 years ago
• luizirber / 2018-python-rust
  This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
  ☆20Updated 6 years ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• addgene / openbio
  A collection of open source bioinformatics tools developed and used by Addgene.
  ☆11Updated last week
• PapenfussLab / HaveYouSwappedYourSamples
  This project contains simple methods to measure sample relatedness and identify potential swaps and contamination
  ☆10Updated 9 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• horta / almosthere
  Progress indicator library written in C.
  ☆10Updated 7 months ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated last year
• dmlond / docker_bwa_aligner
  Docker containers that demonstrate a proof of concept bwa alignment workflow
  ☆14Updated 10 years ago