kieranrcampbell / switchde
Inference of switch-like differential expression along single-cell trajectories
☆19Updated 7 years ago
Alternatives and similar repositories for switchde:
Users that are interested in switchde are comparing it to the libraries listed below
- post-clustering differential expression test☆35Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆28Updated 6 years ago
- ☆16Updated 6 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- An analytics package for single cell data☆22Updated 2 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- ☆19Updated 7 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- ☆14Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- ☆16Updated 3 years ago