kieranrcampbell / switchdeLinks
Inference of switch-like differential expression along single-cell trajectories
☆21Updated 7 years ago
Alternatives and similar repositories for switchde
Users that are interested in switchde are comparing it to the libraries listed below
Sorting:
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- ☆42Updated 4 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆24Updated 3 months ago
- ☆28Updated 6 years ago
- ☆62Updated 5 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- Collection of useful methods for single cell analysis☆14Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 6 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 4 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago