kieranrcampbell / switchde
Inference of switch-like differential expression along single-cell trajectories
☆19Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for switchde
- ☆16Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆14Updated 5 years ago
- ☆16Updated 3 years ago
- ☆14Updated 5 years ago
- Collection of useful methods for single cell analysis☆14Updated 2 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- ☆29Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆21Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆18Updated last year
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago