kharchenkolab / dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
☆91Updated 2 years ago
Alternatives and similar repositories for dropEst:
Users that are interested in dropEst are comparing it to the libraries listed below
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Tools for single-cell data processing☆123Updated 10 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆61Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Mouse cell atlas☆60Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- chromatin Variability Across Regions (of the genome!)☆172Updated 9 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Single Cell Analysis of Five'Ends☆49Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- ☆116Updated last year
- ☆105Updated 11 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆99Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ☆59Updated 7 months ago
- ☆46Updated 2 years ago
- ☆59Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆60Updated 4 years ago