kharchenkolab / dropEstLinks
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
☆95Updated 3 years ago
Alternatives and similar repositories for dropEst
Users that are interested in dropEst are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Mouse cell atlas☆61Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆59Updated last year
- Tools for single-cell data processing☆127Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Genetic multiplexing of barcoded single cell RNA-seq☆130Updated last year
- scRNA-seq cell type identification☆43Updated 6 years ago
- ☆70Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆34Updated 6 years ago
- Doublet detection in single-cell RNA-seq data.☆93Updated 9 months ago
- ☆69Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆74Updated 2 years ago
- ☆88Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 11 months ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago