thelovelab / tximetaLinks
Transcript quantification import with automatic metadata detection
☆67Updated last week
Alternatives and similar repositories for tximeta
Users that are interested in tximeta are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Glimma R package☆50Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- a set of NGS pipelines☆24Updated 2 weeks ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Tools for visualizing genomics data☆69Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆30Updated 10 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- ☆33Updated 3 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last month
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated 2 years ago