thelovelab / tximetaLinks
Transcript quantification import with automatic metadata detection
☆68Updated last month
Alternatives and similar repositories for tximeta
Users that are interested in tximeta are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Glimma R package☆50Updated 11 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 3 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- A tidy interface for coverage analysis☆30Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 6 months ago
- An R interface to the MEME Suite☆52Updated last month
- GREAT Analysis - Functional Enrichment on Genomic Regions☆89Updated 4 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆29Updated 4 months ago
- Create QC and summary reports for Alevin output☆31Updated 3 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ☆62Updated 4 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 4 months ago
- R package wrapping bedtools☆42Updated 4 months ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- interactive plots for differential expression analysis☆32Updated last month