Normalization for single cell RNA-seq data
☆51Jun 11, 2025Updated 10 months ago
Alternatives and similar repositories for SCnorm
Users that are interested in SCnorm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for processing UMI RNA-tag data☆132Mar 15, 2023Updated 3 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Aug 1, 2023Updated 2 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆34Mar 24, 2022Updated 4 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 4 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Mar 19, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆47May 13, 2016Updated 9 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆56Dec 13, 2020Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆11Sep 25, 2017Updated 8 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆293Jul 12, 2024Updated last year
- R package for Empirical Bayes Factor Analysis.☆52Dec 4, 2024Updated last year
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single-cell Hierarchical Poisson Factorization☆75Feb 14, 2026Updated last month
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- ☆55Feb 19, 2025Updated last year
- Accurate and robust imputation of scRNA-seq data☆99Aug 21, 2019Updated 6 years ago
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆341Updated this week
- ☆22Nov 11, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Residual Component Analysis☆10Jul 4, 2017Updated 8 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Jan 11, 2023Updated 3 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago