rhondabacher / SCnorm
Normalization for single cell RNA-seq data
☆47Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SCnorm
- Clustering cells from single cell RNA seq assays☆46Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆53Updated 3 weeks ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated 3 months ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆43Updated 8 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- ☆29Updated 5 years ago
- consistent quantification of external RNA-seq data sets☆58Updated 10 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated 11 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 3 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Updated 5 years ago
- An R-based interface for loom files☆63Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 3 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Single-CELL rna-seq analysis software☆38Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- ☆22Updated 6 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- ☆67Updated 6 years ago