rhondabacher / SCnormLinks
Normalization for single cell RNA-seq data
☆48Updated last month
Alternatives and similar repositories for SCnorm
Users that are interested in SCnorm are comparing it to the libraries listed below
Sorting:
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- ☆55Updated 5 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- ☆23Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 11 months ago
- ☆34Updated 6 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated 3 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- a pipeline for single cell RNA-seq data analysis☆69Updated last year