rhondabacher / SCnorm
Normalization for single cell RNA-seq data
☆47Updated last year
Alternatives and similar repositories for SCnorm:
Users that are interested in SCnorm are comparing it to the libraries listed below
- ☆53Updated 2 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated last month
- Lightweight Iterative Gene set Enrichment in R☆56Updated 7 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- ☆28Updated 6 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆34Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 8 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- ☆22Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- ☆22Updated 7 years ago
- ☆37Updated 8 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆39Updated 5 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago