rhondabacher / SCnorm
Normalization for single cell RNA-seq data
☆47Updated last year
Alternatives and similar repositories for SCnorm:
Users that are interested in SCnorm are comparing it to the libraries listed below
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- ☆53Updated last month
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated last month
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆56Updated 6 months ago
- easy access to benchmark datasets☆50Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- ☆33Updated 5 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆67Updated 6 years ago
- ☆33Updated 6 years ago
- ☆28Updated 6 years ago
- ☆22Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Differential Count Data Analysis Toolbox☆61Updated last year