pachterlab / scRNA-Seq-TCC-prep
Preprocessing of single-cell RNA-Seq (deprecated)
☆62Updated 5 years ago
Alternatives and similar repositories for scRNA-Seq-TCC-prep:
Users that are interested in scRNA-Seq-TCC-prep are comparing it to the libraries listed below
- ☆28Updated 6 years ago
- ☆53Updated last month
- ☆33Updated 5 years ago
- ☆22Updated 7 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 4 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Lightweight Iterative Gene set Enrichment in R☆56Updated 6 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- ☆59Updated 7 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago