edsgard / scphaserLinks
R package for haplotype phasing using single-cell RNA-seq data
☆13Updated 7 years ago
Alternatives and similar repositories for scphaser
Users that are interested in scphaser are comparing it to the libraries listed below
Sorting:
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 9 years ago
- scover☆23Updated last year
- ☆12Updated 5 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆28Updated 6 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- HubPredictor is the R function to run Bayesian Additive Regression Trees (BART) model for predicting chromatin interaction hubs using his…☆9Updated 10 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Pairwise Hierarchical Model☆19Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆14Updated 6 years ago
- ☆15Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year