edsgard / scphaser
R package for haplotype phasing using single-cell RNA-seq data
☆13Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for scphaser
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- scover☆22Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated 3 weeks ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆17Updated last week
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- ☆29Updated 5 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 5 months ago
- ☆11Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago