edsgard / scphaser
R package for haplotype phasing using single-cell RNA-seq data
☆13Updated 7 years ago
Alternatives and similar repositories for scphaser:
Users that are interested in scphaser are comparing it to the libraries listed below
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- scover☆23Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆14Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- HubPredictor is the R function to run Bayesian Additive Regression Trees (BART) model for predicting chromatin interaction hubs using his…☆9Updated 9 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- ☆12Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- Bead-based single-cell atac processing☆32Updated 3 years ago
- ☆19Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week