R package for haplotype phasing using single-cell RNA-seq data
☆14Aug 22, 2017Updated 9 years ago
Alternatives and similar repositories for scphaser
Users that are interested in scphaser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 6 years ago
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 9 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 4 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 13, 2026Updated 5 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆22Mar 11, 2025Updated last year
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Introduction to single-cell RNA-Seq analysis workshop☆15Feb 1, 2017Updated 9 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- ☆12May 4, 2022Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆20Sep 30, 2018Updated 7 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆48May 13, 2016Updated 10 years ago
- Find CNVs in single cell sequencing data.☆22Apr 4, 2026Updated 5 months ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- ☆14Aug 30, 2025Updated last year
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆19Aug 29, 2019Updated 7 years ago
- This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on …☆14Sep 24, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Apr 1, 2024Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- ☆22Mar 16, 2019Updated 7 years ago