consistent quantification of external RNA-seq data sets
☆58Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for conquer
Users that are interested in conquer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆114Aug 13, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 4 months ago
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆108Aug 1, 2023Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 months ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆72Apr 12, 2024Updated 2 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Manage Files Across Sessions☆14Apr 29, 2026Updated 4 months ago
- Deep count autoencoder for denoising scRNA-seq data☆273Mar 21, 2024Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Independent Hypothesis Weighting☆17Sep 25, 2023Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- post-clustering differential expression test☆37May 28, 2019Updated 7 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 10 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆37May 14, 2026Updated 4 months ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 8 years ago
- Batch balanced KNN☆180Oct 11, 2023Updated 2 years ago
- Analysis of single cell RNA-seq data course☆683Apr 11, 2022Updated 4 years ago
- Response to blog post about Salmon☆37Sep 3, 2017Updated 9 years ago
- Cloud-based single-cell copy-number variation analysis tool☆52Mar 21, 2023Updated 3 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Provide R access to the NCI Genomic Data Commons portal.☆91Apr 29, 2026Updated 4 months ago