SnakeChunks / SnakeChunksLinks
Modular blocks to build Snakemake workflows for reproducible NGS analyses
☆22Updated 6 years ago
Alternatives and similar repositories for SnakeChunks
Users that are interested in SnakeChunks are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- ☆21Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Glimma R package☆50Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- ☆24Updated 7 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago