Modular blocks to build Snakemake workflows for reproducible NGS analyses
☆22Sep 7, 2019Updated 6 years ago
Alternatives and similar repositories for SnakeChunks
Users that are interested in SnakeChunks are comparing it to the libraries listed below
Sorting:
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 7 months ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year
- ☆20May 20, 2021Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- A small R package to make sequencing read coverage plots in R.☆40Dec 30, 2025Updated 2 months ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- ✍️ A cross-platform Rust library to sign, publish, and check Nanopublications, with bindings to Python and JS (wasm)☆20Mar 2, 2026Updated 2 weeks ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Adjacency-constrained hierarchical clustering of a similarity matrix☆16Nov 21, 2025Updated 3 months ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Arkanosis' configuration files☆20Feb 26, 2026Updated 3 weeks ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- Bioinformatics in Python☆59Jun 22, 2024Updated last year
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated last month
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- RiboPlotR package for Ribo-plot☆15Jun 12, 2025Updated 9 months ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Apr 5, 2016Updated 9 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Big Browser watching your genome☆11Apr 10, 2016Updated 9 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Nov 26, 2020Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- R data package for annotating/converting Gene IDs☆169Jul 6, 2025Updated 8 months ago
- Clinical Language Annotation Modeling and Processing toolkit☆17Oct 10, 2016Updated 9 years ago
- parseR: Pipeline for rna-seq analysis in R☆17Jun 23, 2017Updated 8 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago