Alternatives and similar repositories for SnakeChunks

Users that are interested in SnakeChunks are comparing it to the libraries listed below

• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 8 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 9 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last month
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated 6 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆47Updated 3 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated last week
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• pachterlab / sleuth_paper_analysis
  Code to reproduce analyses from the sleuth paper
  ☆16Updated 6 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• lmweber / Rtsne-example
  Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
  ☆17Updated 10 years ago
• mnsmar / clipseqtools
  A suite for the analysis of CLIP-Seq datasets.
  ☆12Updated 3 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 11 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆31Updated 8 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆30Updated last year
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• boutroslab / caRpools
  Exploratory data analysis for pooled CRISPR/Cas9 screens
  ☆21Updated 8 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 5 years ago
• rioualen / gene-regulation
  Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.
  ☆11Updated 8 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 6 years ago
• maxplanck-ie / rna-seq-qc
  Rna-seq pipeline, From FASTQ to differential expression analysis...
  ☆20Updated 8 years ago