Modular blocks to build Snakemake workflows for reproducible NGS analyses
☆22Sep 7, 2019Updated 6 years ago
Alternatives and similar repositories for SnakeChunks
Users that are interested in SnakeChunks are comparing it to the libraries listed below
Sorting:
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- ☆20May 20, 2021Updated 4 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- A small R package to make sequencing read coverage plots in R.☆40Dec 30, 2025Updated last month
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 10 years ago
- Gene Expression Atlas☆21Dec 16, 2022Updated 3 years ago
- ☆26Oct 15, 2020Updated 5 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 6 months ago
- A basic cli tool for downloading all the enrolled courses from udemy account☆12Dec 14, 2019Updated 6 years ago
- Material for introductory course on using Blender for 3D printing☆11Jun 22, 2016Updated 9 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- Suite of tools for processing BRB-seq data☆30Jan 19, 2026Updated last month
- A collection of well-known bioinformatics programs.☆25Apr 24, 2015Updated 10 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 11 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- Differential Correlation across Ranked Samples☆12May 31, 2023Updated 2 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 6 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Nov 26, 2020Updated 5 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Apr 25, 2017Updated 8 years ago
- Bioinformatics in Python☆59Jun 22, 2024Updated last year
- Adjacency-constrained hierarchical clustering of a similarity matrix☆16Nov 21, 2025Updated 3 months ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Nov 9, 2015Updated 10 years ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Jan 11, 2023Updated 3 years ago
- Source code for 'Python for Teenagers' by James R Payne☆13Apr 3, 2020Updated 5 years ago