kieranrcampbell / ouijaLinks
Descriptive probabilistic marker gene approach to single-cell pseudotime inference
☆29Updated 5 years ago
Alternatives and similar repositories for ouija
Users that are interested in ouija are comparing it to the libraries listed below
Sorting:
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆21Updated 8 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆55Updated 7 months ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated this week
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- ☆62Updated 6 months ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- ☆28Updated 6 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- ☆16Updated 6 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago