Dimensionality reduction for single cell RNA-seq data
☆36Feb 9, 2020Updated 6 years ago
Alternatives and similar repositories for FastProject
Users that are interested in FastProject are comparing it to the libraries listed below
Sorting:
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- ☆29Feb 1, 2023Updated 3 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆34Mar 24, 2022Updated 3 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- ☆14Jul 18, 2021Updated 4 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆114Oct 15, 2025Updated 4 months ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Apr 17, 2023Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Clustering through Imputation and Dimensionality Reduction☆63Sep 21, 2017Updated 8 years ago
- ☆69May 2, 2018Updated 7 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- ☆55Feb 19, 2025Updated last year
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 8 years ago
- ☆20Mar 28, 2017Updated 8 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 7 months ago
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- False discovery rate regression☆10Nov 12, 2020Updated 5 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Mar 3, 2017Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Code for the paper on t-SNE with variable degree of freedom☆12Jun 27, 2019Updated 6 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago