YosefLab / FastProjectLinks
Dimensionality reduction for single cell RNA-seq data
☆36Updated 5 years ago
Alternatives and similar repositories for FastProject
Users that are interested in FastProject are comparing it to the libraries listed below
Sorting:
- ☆21Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- ☆29Updated 2 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- ☆55Updated 9 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- ☆28Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆35Updated 7 years ago
- ☆20Updated 8 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last week
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago