Alternatives and similar repositories for conquer_comparison

Users that are interested in conquer_comparison are comparing it to the libraries listed below

• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆112Updated 8 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆188Updated 10 months ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 6 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆97Updated 4 years ago
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆183Updated 4 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆200Updated 4 months ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆150Updated 7 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 10 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 7 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆72Updated last year
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆69Updated 2 months ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆138Updated 2 years ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆124Updated 5 months ago
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆230Updated last month
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆92Updated 7 months ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆61Updated last year
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆192Updated 2 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆183Updated 3 weeks ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 9 months ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆105Updated 2 years ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆187Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆108Updated 2 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆92Updated last week
• quadbio / Pando
  Multiome GRN inference.
  ☆127Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆167Updated last year
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆92Updated 3 years ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆94Updated 9 months ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆181Updated last year